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rs230189696 SNP Detail
Summary
  • ID
    rs230189696
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr19:23120068 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                CCCTCCCTTA CCCGCCCCGC
    CCCCGGGACT CCGTACCCCG CCGCTGCGGG GTCGCCCCAC CTGGGGAGAC GCTGGGGGGT
    AGGGTAGTCA AATGGCGCAG CTTTTATCCC ATTCCCTGGT GGGGTTGCAA CGGAGGGGTC
    GGCCTGGGAG GGGAGCCGCA CTCTGCGTGA ATCGTTTTAG GATGACTAAG GACTCATTTA
    R
    CTGGATGGCG GCTACTTTTC AGGGCTTGCC AAGGTGGTTT TAAATTTGGC TAAGAGTCCC
    CTGAGAGGTT TAAAATAAAA CTGCTTCAGG CTGCAGGGGA GACTGATGAA GGAATGGATG
    GTGGATTAAC TTCTTGACTA GTTAGCTTTC CTAAGGAACG TGATTCAGTG CTGATCTGTT
    CCCATGTGAC TTATTTGGTC                                            
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss402048976 MGP_WTSI_19_23217194 EVA_MGPV3 EVA_MGPV3 f SNP A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs230189696 SNP A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss402048976 MGP_WTSI_19_23217194 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr19:23120068 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi10683 CpG island 10683 65 bp distal
Gm56648 predicted gene, 56648 1549 bp upstream
Klf9 Kruppel-like transcription factor 9 Intron
Rr405898 regulatory region 405898 1803 bp downstream
Rr545291 regulatory region 545291 1601 bp distal
Rr545292 regulatory region 545292 1468 bp distal
Tssr155579 transcription start site region 155579 1863 bp downstream
Tssr155580 transcription start site region 155580 1753 bp downstream
Tssr155581 transcription start site region 155581 1737 bp downstream
Tssr155582 transcription start site region 155582 1700 bp downstream
Tssr155583 transcription start site region 155583 1671 bp downstream
Tssr155584 transcription start site region 155584 1627 bp downstream
Tssr155585 transcription start site region 155585 1567 bp downstream
Tssr155586 transcription start site region 155586 1441 bp downstream
Tssr155587 transcription start site region 155587 1037 bp downstream
Tssr155588 transcription start site region 155588 1003 bp downstream
Tssr158622 transcription start site region 158622 1731 bp upstream
Tssr158623 transcription start site region 158623 628 bp upstream
Tssr158624 transcription start site region 158624 284 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/25/2025
MGI 6.24
The Jackson Laboratory