rs230195688 SNP Detail

Summary

• ID
  rs230195688
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:100977157 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAATTCACC AGATCCTCCC
  ACCCTGCTGC AAAGGGTTGT TCATTTCTCA GACCATCGAT AGTAGGCCCA TGTAAGACAA
  TGGGCTAAGA CAGTTCCCAC CCCGTCATCA ACTGGGACAA CAGGAACAGC CCATCTTTAG
  GACTTGGGAC TGGTTGTCTC AGGAGGTAGA GCTGACTTCC AAGGCCAAAG ACATTCCCCA
  Y
  ACACGAAGAC AATGCCTAGG ACAGATTCAA CTAAAGCCAC AATTCTAAGC CATCCCAGAC
  AAGAAACCAG AATTAGCCAA TGGGGGAAGA GTCTCCTTCC CAAAGATGAT CATAAGCACT
  TCCCACCTGA CCATTTAATA CATATAAAGT TCTCCGTCAG GGCCTGGAAA AGGTGTTCAA
  TAAATGGTAA TTAGAATTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320850800	CHEV_3_100873764	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs230195688					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:100977157 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ptgfrn	prostaglandin F2 receptor negative regulator			Intron
				Noncoding-Transcript-Variant
Rr581951	regulatory region 581951			403 bp distal
Rr581952	regulatory region 581952			331 bp proximal