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rs230196665 SNP Detail
Summary
  • ID
    rs230196665
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr2:164175947 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TACGCAGTCT AGCGAGCGAT
CAAATCAAGC ACGCACCACC TGGGTTAGAA GCTAGCATAT ATGCTAGCTT CTAACAGAAT
TTTGTCGCCT CTTGTGCTAT GCTTGGTGGA AGTTCATTTC ATGGTTATCG TAGTACCAAA
TGTTGTGGTC CGTGGCATCT CCTCATGTCT ACACAGCGCT GTTAGGAGCA GTGATCTCTT
Y
CCAAGGCTAT AGCTTCCGAG AATTACCTTT CTCTTCCCCC TCAACAAAAG AAAGAGAAAT
GTTTCTGCTT GTGACACACC AGAGATGAAA TATAGCAGTG GCCTGCGGTA AAGGGAGCCA
CAGAGTCCAG GGACCTGCAC CATGTCACCC CTCCACTCTT CCCTGTCCTT CCTCACAGGT
TGTCCTTGTT CCCTAGGTGT                                            

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss356429550 MGP_WTSI_2_164159763 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs230196665 SNP C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss356429550 MGP_WTSI_2_164159763 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr2:164175947 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Svs5 seminal vesicle secretory protein 5 within coordinates
Tssr744 transcription start site region 744 693 bp downstream
Tssr745 transcription start site region 745 650 bp downstream
Tssr746 transcription start site region 746 643 bp downstream
Tssr747 transcription start site region 747 630 bp upstream
Tssr748 transcription start site region 748 605 bp downstream
Tssr749 transcription start site region 749 568 bp downstream
Tssr750 transcription start site region 750 551 bp downstream
Tssr751 transcription start site region 751 499 bp downstream
Tssr752 transcription start site region 752 437 bp downstream
Tssr753 transcription start site region 753 427 bp downstream
Tssr754 transcription start site region 754 237 bp upstream
Tssr21562 transcription start site region 21562 1291 bp downstream
Tssr21563 transcription start site region 21563 1282 bp downstream
Tssr21564 transcription start site region 21564 1251 bp downstream
Tssr21565 transcription start site region 21565 1238 bp downstream
Tssr21566 transcription start site region 21566 1227 bp downstream
Tssr21567 transcription start site region 21567 1215 bp downstream
Tssr21568 transcription start site region 21568 1206 bp downstream
Tssr21569 transcription start site region 21569 701 bp downstream
Tssr21570 transcription start site region 21570 659 bp downstream
Tssr21571 transcription start site region 21571 631 bp downstream
Tssr21572 transcription start site region 21572 617 bp downstream
Tssr21573 transcription start site region 21573 586 bp downstream
Tssr21574 transcription start site region 21574 524 bp downstream
Tssr21575 transcription start site region 21575 249 bp upstream
Tssr21576 transcription start site region 21576 265 bp upstream
Tssr21577 transcription start site region 21577 284 bp upstream
Tssr27433 transcription start site region 27433 671 bp upstream
Tssr27434 transcription start site region 27434 641 bp upstream
Tssr27435 transcription start site region 27435 616 bp upstream
Tssr27436 transcription start site region 27436 599 bp upstream
Tssr27437 transcription start site region 27437 558 bp upstream
Tssr27438 transcription start site region 27438 541 bp upstream
Tssr27439 transcription start site region 27439 536 bp upstream
Tssr27440 transcription start site region 27440 520 bp upstream
Tssr27441 transcription start site region 27441 471 bp upstream
Tssr27442 transcription start site region 27442 461 bp upstream
Tssr27443 transcription start site region 27443 402 bp upstream
Tssr27444 transcription start site region 27444 391 bp upstream
Tssr27445 transcription start site region 27445 222 bp downstream
Tssr27446 transcription start site region 27446 266 bp downstream
Tssr27447 transcription start site region 27447 361 bp downstream
Tssr27448 transcription start site region 27448 975 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory