rs230201850 SNP Detail

Summary

• ID
  rs230201850
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:175460267 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGAA AATATGCAGA ACTTGTCTTA
  C
  GTATTTATAT CTCACTTATC CCAAT                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320151895	CHEV_1_177562832	CHEVERUD	SCREENING_POP	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs230201850					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:175460267 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Kmo	kynurenine 3-monooxygenase			Intron
				Noncoding-Transcript-Variant
Rr396618	regulatory region 396618			582 bp downstream
Rr423839	regulatory region 423839			511 bp distal
Tssr10313	transcription start site region 10313			723 bp downstream
Tssr10314	transcription start site region 10314			700 bp downstream
Tssr10315	transcription start site region 10315			677 bp downstream
Tssr10316	transcription start site region 10316			644 bp downstream
Tssr10317	transcription start site region 10317			607 bp downstream
Tssr10318	transcription start site region 10318			600 bp downstream
Tssr10319	transcription start site region 10319			590 bp downstream
Tssr10320	transcription start site region 10320			568 bp downstream
Tssr10321	transcription start site region 10321			550 bp downstream
Tssr10322	transcription start site region 10322			541 bp downstream
Tssr10323	transcription start site region 10323			516 bp downstream