rs230205458 SNP Detail

Summary

• ID
  rs230205458
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:95242374 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTGCCTTTC CTTTAGAAAT
  CAGTAGCCTA ACCTCAGCAT CTTGCTCTCT GAGGCTTGCC TCTGCCTTCA CAGACCCTGA
  AGTAGAAGTG CTCTTCCATC CCCAGGAATT TTGATTACAG TGCGGTGAAA TACTTCTCTC
  ACTACTCTGC AGTTGGTGTA ACTAACACGT TTTGCCTGTT AGAATGCACT CCTATTTCTG
  W
  GGCAGGGTAC CATAAAAGTA GCGCACAAAG TCCTGATTGG ATGTTTCACT TTTGCAAAAC
  TTGCCAATTA TGTTTCTTAG ATGGTGCCCT TAATCTATCC CAAAGTTAAA TTGTCCTCAA
  TTAATTGGGC GCCACATCTC TGGAGAGGTG TCACATAGAG GAAGACCCCC AAGCAGAAGG
  GGCTAGCTAG CCAAGAGAAC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss350554902	MGP_WTSI_1_97211226	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	T	A	A	A	A	T	A	A	A	A	A	T	A	A	A	A	A	T	T	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs230205458					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	T	A	A	A	A	T	A	A	A	A	A	T	A	A	A	A	A	T	T	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss350554902	MGP_WTSI_1_97211226	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:95242374 () rs orientation: forward

Symbol	Name	Function Class
Cpgi614	CpG island 614	273 bp distal
Fam174a	family with sequence similarity 174, member A	within coordinates
Rr29863	regulatory region 29863	within coordinates
Rr396183	regulatory region 396183	987 bp downstream
Tssr8214	transcription start site region 8214	972 bp downstream
Tssr8215	transcription start site region 8215	945 bp downstream
Tssr8216	transcription start site region 8216	549 bp downstream
Tssr8217	transcription start site region 8217	527 bp downstream
Tssr8218	transcription start site region 8218	506 bp downstream
Tssr8219	transcription start site region 8219	488 bp downstream
Tssr13058	transcription start site region 13058	577 bp upstream