rs230222204 SNP Detail

Summary

• ID
  rs230222204
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:96185099 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTTTTGTTC CCTGGCTTCC
  TGGGGGTGGG GGAGGGGATG GGGGGGGGGA AAGATCTCTT GGGTATGAGA CAGATTCCTA
  AAGTGGTTGA TAGGCTTCAG GCTGACTGGT GAGGACTATA AAATGGGACG AAAGGTCCCC
  AGAGAAGCTA TCAGTGACAG AGAGATAAGT GACTGTGGGT ATGAATGAAG GACAGGAGGC
  K
  TTGTGGTTTC GTTTGGTTTG CATGAATAAG GATTGTCTTC TTGTTTCTTA AGGAGCCTGT
  GCAGATAGAT GGTTCAGGCT CAGGTCTCAG GTTATCCGAT TTTAGTGTCT TGGGAGAGTG
  TGTAGGTACA TTGGTCTCCT GGGCTATTAG GAGAGGGAAA CGTAGCCACT TGTGGCACAA
  GACTGGGGTT CCCTGGGGGC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss384366372	MGP_WTSI_11_96155587	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs230222204					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss384366372	MGP_WTSI_11_96155587	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:96185099 () rs orientation: forward

Symbol	Name	Function Class
2700088M07Rik	RIKEN cDNA 2700088M07 gene	581 bp upstream
Cpgi3639	CpG island 3639	669 bp distal
Cpgi3640	CpG island 3640	264 bp proximal
Hoxb5os	homeobox B5 and homeobox B6, opposite strand	within coordinates
Hoxb6	homeobox B6	within coordinates
Rr386515	regulatory region 386515	1906 bp downstream
Rr455356	regulatory region 455356	1787 bp distal
Rr455357	regulatory region 455357	640 bp distal
Rr455358	regulatory region 455358	845 bp distal
Rr455359	regulatory region 455359	413 bp distal
Rr455360	regulatory region 455360	420 bp proximal
Tssr104479	transcription start site region 104479	1765 bp downstream
Tssr110326	transcription start site region 110326	1132 bp downstream