rs230229884 SNP Detail

Summary

• ID
  rs230229884
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr17:25404813 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TGCCATCTT TTTTTTTTTT TTTTTCTCTT
  CTGCTCTTCA TTCCCACATG AGAACTTAaa aacttgacag aagtggtagg gtatgcttgt
  catctcaaca cttatgaaac tgaggcagga ggatcctaag tttggggtct gcttgggcta
  M
  gtagggaggg cctgtctcaa acaaaacaaa aCATCAATAA TATAGTGGGT TGGTTTTTTT
  TGTTTGTTTG TTTCTGTCTT TTTCACAGTG TTGTGATTGA ACTCAGGAGT CTATTGTGCT
  ATCCTACCAA TGAGGTCTGT TTCCAGCTCA                                 
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325336552	CHEV_17_25322784	CHEVERUD	SCREENING_POP	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs230229884					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:25404813 () rs orientation: forward

Symbol	Name	Function Class
4930568E02Rik	RIKEN cDNA 4930568E02 gene	1270 bp upstream
Rr370183	regulatory region 370183	1258 bp downstream
Rr523509	regulatory region 523509	780 bp distal
Tssr5037	transcription start site region 5037	1276 bp downstream
Tssr143142	transcription start site region 143142	1237 bp downstream
Tssr143143	transcription start site region 143143	1221 bp downstream
Tssr146818	transcription start site region 146818	1437 bp upstream
Tssr146819	transcription start site region 146819	1371 bp upstream
Uqcc4	ubiquinol-cytochrome c reductase complex assembly factor 4	mRNA-UTR