rs230233014 SNP Detail

Summary

• ID
  rs230233014
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:130546476 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GCAGCACCC TCACCACCCA CTACTGTGGC
  TACCTTGGAC ACAGAGGCCC CGACACCTAG GCTGGTCAAC ACAGCTACCT CGAGGCCACG
  AGCCCTTCCT CGGCCAGTCA CCACCCAGGA GCCTGATGTT GCTGAGAGGA GTACCCTGCC
  R
  TTGGGGACCA CGGCTCCTGG ACCCACGGAG ATGGCTCAGG TGAGGACAGT GGGTGAGGGG
  TTAGCGTGGG CAGAGATGGG TTGGGCAGGG ACCAGGAGGT ACCAGGGGTG AAGTAGGCAA
  GGTGGGCCTA GTGTGTGTGC TGAGTGGGAG                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321318845	CHEV_4_130375080	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs230233014					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:130546476 () rs orientation: forward

Symbol	Name	Function Class
Sdc3	syndecan 3	within coordinates
Tssr39265	transcription start site region 39265	559 bp downstream
Tssr39266	transcription start site region 39266	537 bp downstream
Tssr39267	transcription start site region 39267	518 bp downstream
Tssr39268	transcription start site region 39268	488 bp downstream
Tssr39269	transcription start site region 39269	451 bp downstream
Tssr39270	transcription start site region 39270	422 bp downstream
Tssr39271	transcription start site region 39271	377 bp downstream
Tssr39272	transcription start site region 39272	361 bp downstream
Tssr39273	transcription start site region 39273	306 bp downstream
Tssr39274	transcription start site region 39274	264 bp downstream
Tssr39275	transcription start site region 39275	248 bp downstream
Tssr39276	transcription start site region 39276	212 bp downstream
Tssr39277	transcription start site region 39277	195 bp downstream
Tssr39278	transcription start site region 39278	184 bp downstream
Tssr43599	transcription start site region 43599	456 bp upstream
Tssr43600	transcription start site region 43600	413 bp upstream
Tssr43601	transcription start site region 43601	246 bp upstream