rs230248489 SNP Detail

Summary

• ID
  rs230248489
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:95800649 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAGGATTCC TCTGTTCTGC
  AGACTCCTAA GGACCAACCC GTCCTCATAC AAATGATGAT TCCTGATAAT ATGAAATCTC
  TCTCCCCAGC CTGAGGAAAA GACACCACTC AAGTTTATTT TCCAGACTAT AAATAAAGGA
  AGTATGACAT CAAAGGAACC AAGCAGCTCG GCGTGGGGCG GGGGTGGAGG GGATGGGTGT
  M
  ATTTCCTCTC AGTCCCATTG CTCTAGTTGC TTTGTGACTC CACGATTCCT TCCAAACATT
  TTCCTAATAT TTCTCTCCCG GCTCCTCCTG CTTTTCTCAT TCTGTCATTA CAGAATACAA
  GTGGAGGCTT CATTTAAGAC GTAATTCCTA TACCAGGCTG CCCAAAGAGT TCCAACTTTT
  AAGCCTAACT TTGATCCCTC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss358909665	MGP_WTSI_3_95697260	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs230248489					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358909665	MGP_WTSI_3_95697260	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95800649 () rs orientation: forward

Symbol	Name	Function Class
Aph1a	aph1 homolog A, gamma secretase subunit	632 bp upstream
BC028528	cDNA sequence BC028528	1332 bp upstream
Cpgi13526	CpG island 13526	364 bp proximal
Cpgi13527	CpG island 13527	932 bp proximal
Rr78078	regulatory region 78078	448 bp distal
Rr78079	regulatory region 78079	within coordinates
Rr397845	regulatory region 397845	379 bp upstream
Tssr30653	transcription start site region 30653	583 bp upstream
Tssr30654	transcription start site region 30654	616 bp upstream
Tssr30655	transcription start site region 30655	676 bp upstream
Tssr34557	transcription start site region 34557	1401 bp upstream
Tssr34558	transcription start site region 34558	1352 bp upstream
Tssr34559	transcription start site region 34559	492 bp upstream
Tssr34560	transcription start site region 34560	460 bp upstream