rs230259298 SNP Detail

Summary

• ID
  rs230259298
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:80367528 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGTGAGTTA GAACTCAGGA
  GTGGGACGAG TTCCAGGGAA GAATACTCAA GGCTTTTCTT TTTTGAGAGC GAGCCCTTTT
  CCCCATGTTA TGTAATCAGA TGTAGGTGTG GGGTCACCAA AACCCATCCT ATATTTGAAG
  ACTAGCTGCT AAAGTAGTTG GATTAAAAAA GTTTCACATT ACTGCTCCAG TTTGTATTTC
  R
  TACCATTTAC AGTTTGCTTT CCTTTGGCTT AATCTGGAGT TTTTATGGTT TTGTCCCCTC
  CCGCCCGCCC CCTTTTGTGA GCTAACTAGC TTTTAAGATT TCTGTTTTAG AATCACCAGG
  CTATGTATTT TTCAGAGTAT GTAAATATGG AACACTTTGC ACTTATGACA GGTATGTCCA
  TTGAAACATT CTTTGATGCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss375288943	MGP_WTSI_8_82164798	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs230259298					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss375288943	MGP_WTSI_8_82164798	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:80367528 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20624	CpG island 20624	460 bp distal
Gm51579	predicted gene, 51579	994 bp upstream
Otud4	OTU domain containing 4	within coordinates
Rr400987	regulatory region 400987	1416 bp downstream
Rr665883	regulatory region 665883	1185 bp distal
Tssr78137	transcription start site region 78137	1501 bp downstream
Tssr78138	transcription start site region 78138	1475 bp downstream
Tssr78139	transcription start site region 78139	1428 bp downstream
Tssr78140	transcription start site region 78140	1380 bp downstream
Tssr78141	transcription start site region 78141	1169 bp downstream
Tssr78142	transcription start site region 78142	1119 bp downstream
Tssr78143	transcription start site region 78143	712 bp downstream
Tssr78144	transcription start site region 78144	681 bp downstream
Tssr78145	transcription start site region 78145	658 bp downstream