rs230260370 SNP Detail

Summary

• ID
  rs230260370
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:174186977 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGTCAAAAG CAAGGGCGGA
  TCCCACCACC ACTTGCCTTA CGGGGTACAC ACTTGGCACA CACTGACCAC CGTGTCTCCT
  TTTCTTTCAA GCTTCCTGGA CAAGATTGAT GTGATCAAGC AGGCCGACTA CGTGCCAAGT
  GACCAGGTAC GCGTGCGCCT CTGTCCTCAA GCCTGGGGTT CCACGTTGCT GGTTCTTCTC
  S
  GGGCAATTAG GGTGAGACCT ACTGACCCCC CTCTTTGTTC TAGGACCTGC TTCGCTGCCG
  TGTCCTGACC TCTGGAATCT TTGAGACCAA GTTCCAGGTG GACAAAGTCA ACTTCCAGTA
  AGTGAATCGT TGTCCCGCCC CAACTATCTG GCCTGGAGAG TGGTGGGCCC AGGGTAACCC
  AGTATTTTCC GGTTCCAGCA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356687546	MGP_WTSI_2_174170685	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs230260370					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356687546	MGP_WTSI_2_174170685	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:174186977 () rs orientation: forward

Symbol	Name	Function Class
Gnas	GNAS complex locus	within coordinates
Rr397554	regulatory region 397554	761 bp downstream
Rr572112	regulatory region 572112	857 bp distal
Rr572113	regulatory region 572113	1960 bp proximal
Tssr792	transcription start site region 792	1150 bp upstream
Tssr22135	transcription start site region 22135	1919 bp downstream
Tssr22136	transcription start site region 22136	781 bp downstream
Tssr22137	transcription start site region 22137	208 bp upstream
Tssr22138	transcription start site region 22138	304 bp upstream
Tssr22139	transcription start site region 22139	816 bp upstream
Tssr22140	transcription start site region 22140	1070 bp upstream
Tssr22141	transcription start site region 22141	1133 bp upstream
Tssr22142	transcription start site region 22142	1173 bp upstream
Tssr22143	transcription start site region 22143	1268 bp upstream
Tssr22144	transcription start site region 22144	1383 bp upstream
Tssr22145	transcription start site region 22145	1412 bp upstream
Tssr22146	transcription start site region 22146	1418 bp upstream
Tssr28013	transcription start site region 28013	55 bp upstream
Tssr28014	transcription start site region 28014	292 bp downstream