rs230261465 SNP Detail

Summary

• ID
  rs230261465
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:141939488 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATGAC TGCCAGCCAG GCATGCACCT
  M
  GGTGCCTCTA GCAAATTAAA TATCT                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322471194	CHEV_7_149571656	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs230261465					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:141939488 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19961	CpG island 19961	1682 bp proximal
Ctsd	cathepsin D	Intron
Rr381604	regulatory region 381604	457 bp upstream
Rr658152	regulatory region 658152	1068 bp distal
Rr658153	regulatory region 658153	64 bp proximal
Tssr70145	transcription start site region 70145	262 bp downstream
Tssr70146	transcription start site region 70146	241 bp downstream
Tssr70147	transcription start site region 70147	1249 bp upstream
Tssr75787	transcription start site region 75787	162 bp upstream
Tssr75788	transcription start site region 75788	140 bp upstream
Tssr75789	transcription start site region 75789	120 bp upstream
Tssr75790	transcription start site region 75790	128 bp downstream
Tssr75791	transcription start site region 75791	156 bp downstream
Tssr75792	transcription start site region 75792	177 bp downstream
Tssr75793	transcription start site region 75793	920 bp downstream
Tssr75794	transcription start site region 75794	1074 bp downstream
Tssr75795	transcription start site region 75795	1098 bp downstream