rs230264518 SNP Detail

Summary

• ID
  rs230264518
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:151824514 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAGTAATGA ATCCACCCCA
  AGACTCAGTT TCCTCACTGG GAAAGCCGTC TTGGAATCGT GTGAGGATTA ACTGGGTCAT
  GACAGCATCG GCTCCCGACT CTGTGACTCA AGTACGGTTC CACATACTTC ACATGCATCA
  GTCGTGCTAA ATTCAGATGT TATAGATTAG AAAGAGGGGA ATCTGGGCTA TGTAACCCAG
  W
  GATCACTGAG CTAATAAGAA GCTAGAAGCT GGAAACAACC CAGATGTCCC TGAGAGGAAA
  AATGAATACA GAAAATGTGG TACATTTACA CAATGAATAT TGCTCAGCTA TTAAAAACAA
  TGACTTCATG AAATTCTCAG GCAAATGGAT GAAACTAGAA AATATAATCC TGAGTGAGAT
  AACCCAGTAC AAAAGAACAC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321028129	CHEV_3_151781841	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs230264518					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:151824514 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gipc2	GIPC PDZ domain containing family, member 2			Intron
				Noncoding-Transcript-Variant
Rr587460	regulatory region 587460			1229 bp proximal
Tssr1098	transcription start site region 1098			1219 bp downstream
Tssr32394	transcription start site region 32394			1433 bp upstream