rs230269991 SNP Detail

Summary

• ID
  rs230269991
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:97146922 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGTTTTTTT TTTTTTTAAG
  AAGTGGAGAG TGGAAGTTAT GCTATACCTG CAGGCAACTC TCAGAAGTAT CTTGCCATCA
  CCCCACAGCA TAAACCAGCT GTACACAAAC TCGCAGGGGG CAGGTCTATA TAAGACCAGC
  TCTCTGGACT CCCATGCATG TCAAAGGCAA GAGAGGCATG AAAGGTGTGT GTTTACTAGC
  M
  TGGAGACAAG AAAGCTGACT TCAGTAATAG CAAAAGGTAT GGCCTTACTT TGCGGAAGGT
  AATGTTTTTT TTTCAGGTTT ATTTATTTGA TAACCTTTAT CACCTCATGG ATCTCCACCA
  TGTTAGTCAA TGTTCGGTTG CTATAACAAA ATACCTAAAT GGGGCGCCTT TCTCAAATGA
  AATTGAACCC ACAATTATAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325076409	CHEV_15_97079472	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs230269991					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:97146922 () rs orientation: forward

Symbol	Name	Function Class
Amigo2	adhesion molecule with Ig like domain 2	1754 bp upstream
Cpgi7616	CpG island 7616	982 bp distal
Gm57814	predicted gene, 57814	within coordinates
Pced1b	PC-esterase domain containing 1B	within coordinates
Rr305670	regulatory region 305670	79 bp proximal
Rr308785	regulatory region 308785	479 bp proximal
Rr312356	regulatory region 312356	121 bp distal
Tssr132853	transcription start site region 132853	1989 bp downstream
Tssr132854	transcription start site region 132854	1593 bp downstream
Tssr136109	transcription start site region 136109	1784 bp upstream
Tssr136110	transcription start site region 136110	1726 bp upstream