rs230274726 SNP Detail

Summary

• ID
  rs230274726
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:87841683 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCAGTGGCA AACAAATAAA
  TGAAAGTTTC TTGAAATATA AATTTTGTCC AGTGTCATGT TGGTAAGAAG CTGTCAACCA
  GTGAAACCAT AGTAGTAAGT GAATACTTTG ATGAAATTTG CTATTCTGCT GTGTATATAG
  GAGGATGAAA TATAAAATGA TATAAAATAT AAAACTTATC ACTCTGCTCT TTAGTTTCCA
  R
  GAACTTACCA AAAAACATAA GGAGGAGAAA ATAACCTGGA AATCCTCTTA GACCTTAAAT
  GCAAACATAA ATAAATAAAT AAATAGATAG ATAGATAGAT AGATAGATAG ATAGATAGAT
  AGATAGTTTC CCTTTTAGTC TAACACTTGC CTAAAATGTG TTCCATGTAG CAAATGAAAC
  GCTGCAATCT TTTGACTCCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss365777272	MGP_WTSI_5_88122849	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs230274726					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss365777272	MGP_WTSI_5_88122849	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:87841683 () rs orientation: forward

Symbol	Name	Function Class
Csn2	casein beta	within coordinates
D5Mit12	DNA segment, Chr 5, Massachusetts Institute of Technology 12	38 bp proximal
D5Mit16	DNA segment, Chr 5, Massachusetts Institute of Technology 16	44 bp proximal
D5Mit16.1	DNA segment, Chr 5, Massachusetts Institute of Technology 16.1	144 bp proximal
D5Mit16.2	DNA segment, Chr 5, Massachusetts Institute of Technology 16.2	within coordinates
Tssr1529	transcription start site region 1529	730 bp upstream
Tssr46883	transcription start site region 46883	677 bp upstream
Tssr46884	transcription start site region 46884	690 bp upstream
Tssr46885	transcription start site region 46885	718 bp upstream
Tssr46886	transcription start site region 46886	746 bp upstream
Tssr46887	transcription start site region 46887	763 bp upstream
Tssr46888	transcription start site region 46888	832 bp upstream
Tssr46889	transcription start site region 46889	881 bp upstream
Tssr46890	transcription start site region 46890	896 bp upstream
Tssr46891	transcription start site region 46891	940 bp upstream
Tssr46892	transcription start site region 46892	944 bp upstream
Tssr46893	transcription start site region 46893	972 bp upstream
Tssr46894	transcription start site region 46894	1019 bp upstream
Tssr46895	transcription start site region 46895	1042 bp upstream
Tssr46896	transcription start site region 46896	1137 bp upstream
Tssr51613	transcription start site region 51613	1145 bp upstream
Tssr51614	transcription start site region 51614	1082 bp upstream
Tssr51615	transcription start site region 51615	1026 bp upstream
Tssr51616	transcription start site region 51616	992 bp upstream
Tssr51617	transcription start site region 51617	983 bp upstream
Tssr51618	transcription start site region 51618	706 bp downstream
Tssr51619	transcription start site region 51619	744 bp downstream
Tssr51620	transcription start site region 51620	753 bp downstream
Tssr51621	transcription start site region 51621	762 bp downstream
Tssr51622	transcription start site region 51622	800 bp downstream
Tssr51623	transcription start site region 51623	825 bp downstream
Tssr51624	transcription start site region 51624	843 bp downstream
Tssr51625	transcription start site region 51625	849 bp downstream
Tssr51626	transcription start site region 51626	859 bp downstream
Tssr51627	transcription start site region 51627	874 bp downstream
Tssr51628	transcription start site region 51628	915 bp downstream
Tssr51629	transcription start site region 51629	1007 bp downstream
Tssr51630	transcription start site region 51630	1101 bp downstream
Tssr51631	transcription start site region 51631	1150 bp downstream
Tssr51632	transcription start site region 51632	1444 bp downstream