rs230275128 SNP Detail

Summary

• ID
  rs230275128
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:74719735 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GGGCCACTT GAGGGAGACA GGACAAGCTG
  GACAGTTTGA GTGAATGGTG TTGGCTTCCA TGCAAAACAA CAACAAAAAG GCCGGTAGCG
  CCACCTCTGG CATCTCCATG TTCTGTAGTA TGTGTAGGTC AGGTGCAATA ACACCCAAAG
  Y
  AAGTAGACAC CAGGATGGAA AGGCAGAGCC TGCACCCCTG TAGGCTTCTA AGAAAAGGCT
  GCTTAACCTG TAGACAACTG GGCTCTCAAG AGTCTACCTT CTCACTAAAG ATCACCTGGT
  CTTACCTATA AACATACTTA GCCAGTTGTC                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323749903	CHEV_11_74642411	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs230275128					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:74719735 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3246	CpG island 3246	790 bp proximal
Gm74357	predicted gene, 74357	1036 bp downstream
Rr402716	regulatory region 402716	151 bp downstream
Rr402717	regulatory region 402717	1322 bp upstream
Rr450973	regulatory region 450973	1579 bp distal
Rr450974	regulatory region 450974	623 bp distal
Rr450975	regulatory region 450975	129 bp distal
Rr450976	regulatory region 450976	1175 bp proximal
Rr450977	regulatory region 450977	1890 bp proximal
Tssr102911	transcription start site region 102911	1979 bp upstream
Tssr102912	transcription start site region 102912	1998 bp upstream
Tssr109144	transcription start site region 109144	982 bp downstream
Tssr109145	transcription start site region 109145	1750 bp downstream