rs230276673 SNP Detail

Summary

• ID
  rs230276673
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:72812285 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    cttggttgt cctgaaactg gatttgtaga
  ccaggttcac ctggaactca cagaaaccca cctgcctctg cctcctgagt actgggatta
  aaagtggggg ccatctccgc caactacttc gtggTAATTT TTAATACAGT GACACATGTT
  Y
  TCTTTCTCTT GTGTCATGCA AGCAAGAACA GTCTTTCAGG GCCAAAAACC AGATAACTCA
  AACTAGCTGT TTTGAGGCAA AGCTCTTAAA AATGCACATC AGTgctgggc ggtgttgaca
  cacgccttta atcccagcac ttgggaggca                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320344169	CHEV_2_72819998	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs230276673					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:72812285 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11763	CpG island 11763	845 bp distal
D130067C23Rik	RIKEN cDNA D130067C23 gene	341 bp downstream
Rr373352	regulatory region 373352	612 bp downstream
Sp3	trans-acting transcription factor 3	1495 bp upstream
Sp3os	trans-acting transcription factor 3, opposite strand	within coordinates
Tssr18363	transcription start site region 18363	1965 bp downstream
Tssr24526	transcription start site region 24526	1470 bp upstream
Tssr24527	transcription start site region 24527	1029 bp upstream
Tssr24528	transcription start site region 24528	1001 bp upstream