rs230280360 SNP Detail

Summary

• ID
  rs230280360
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:78452964 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ggggactaa attaaggact tctccaaaag
  agcagccagt acccttaacg gctgagcctt catctctcca gcccTACTCT CTACCTTTTC
  TACCAGCATT AAAAAGAAAA CCAATATAAG GAAAACACCC CTGATCCTGA ATGGGAGGAA
  R
  TACCACATAG TAAAATCTGG AGGATAACTG GAGAATCTGA ATAGAGAAGG TACTCAGGTG
  ACATATCATT TGTTAAATTT CTTAACATCT TGGGCTAACA CAGGCTGGAG AGAGAGCTCA
  CCAGGCTAAG TGTCTGCATG CAACCCCGAT                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323756853	CHEV_11_78375640	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs230280360					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:78452964 () rs orientation: forward

Symbol	Name	Function Class
D11Bhm157	DNA segment, Chr 11, Boehm 157	833 bp distal
D11Bhm181e	DNA segment, Chr 11, Boehm 181, expressed	538 bp upstream
D11Mit353	DNA Segment, Chr 11 Massachusetts Institute of Technology 353	839 bp distal
Gm22947	predicted gene, 22947	403 bp upstream
Rr452027	regulatory region 452027	1291 bp distal
Rr452028	regulatory region 452028	1482 bp distal
Rr452029	regulatory region 452029	1286 bp distal
Rr452030	regulatory region 452030	196 bp distal