rs230286669 SNP Detail

Summary

• ID
  rs230286669
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:122640446 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGGGAGGTGG CGGCGTCGGG
  GACGGCTCCG CGGAGGCTGC TCTAATAGCA TTTATCCGCC GCTGCCTCCC CTCTCGCCGC
  CGCCGCGGCA TGTGGACGCC GCTCATTGGC CGAGAGAGCC CCCAGCGCGG CGCGGGCGGC
  GCGGCCCCGC CCCCTCCTCC GGCGCCCTCC CGCGCGCGCG CACCGCGCGC CCACGCCGCC
  R
  GCAGGCCCCG CCTCCTCCCG CGCGCCGCCC CCCAGGAACC CGGATCGAGG CCGCGCGCGG
  CGCCTGTGCG CGCGCACGGG GCCAGGGCCA CCTCTGCGTC CACGCTGTGC TCGATGCGCT
  GCGGCCACCG GCGCGGGCGG AGGGTGAGCC TGACTTTTCC GGGGCCACGG CTTTTCCCGT
  ATCGACCGCG CGCGGGGATA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	SWR/J	WSB/EiJ
ss366519171	MGP_WTSI_5_122952392	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	SWR/J	WSB/EiJ
rs230286669					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss366519171	MGP_WTSI_5_122952392	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:122640446 () rs orientation: forward

Symbol	Name	Function Class
Atp2a2	ATPase, Ca++ transporting, cardiac muscle, slow twitch 2	158 bp upstream
Cpgi16553	CpG island 16553	within coordinates
Gm43361	predicted gene 43361	1535 bp downstream
Gm57291	predicted gene, 57291	62 bp upstream
Rr378565	regulatory region 378565	1369 bp upstream
Rr399329	regulatory region 399329	1070 bp upstream
Rr619900	regulatory region 619900	1807 bp distal
Rr619901	regulatory region 619901	881 bp distal
Rr619902	regulatory region 619902	within coordinates
Rr619903	regulatory region 619903	184 bp distal
Rr619904	regulatory region 619904	101 bp proximal
Tssr1626	transcription start site region 1626	1452 bp downstream
Tssr48697	transcription start site region 48697	1648 bp downstream
Tssr48698	transcription start site region 48698	770 bp downstream
Tssr48699	transcription start site region 48699	648 bp downstream
Tssr48700	transcription start site region 48700	573 bp downstream
Tssr48701	transcription start site region 48701	83 bp upstream
Tssr53126	transcription start site region 53126	1550 bp upstream
Tssr53127	transcription start site region 53127	1160 bp upstream
Tssr53128	transcription start site region 53128	1118 bp upstream
Tssr53129	transcription start site region 53129	1102 bp upstream
Tssr53130	transcription start site region 53130	595 bp upstream
Tssr53131	transcription start site region 53131	238 bp upstream
Tssr53132	transcription start site region 53132	207 bp upstream
Tssr53133	transcription start site region 53133	139 bp upstream
Tssr53134	transcription start site region 53134	105 bp upstream
Tssr53135	transcription start site region 53135	89 bp upstream
Tssr53136	transcription start site region 53136	244 bp downstream
Tssr53137	transcription start site region 53137	348 bp downstream