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rs230288806 SNP Detail
Summary
  • ID
    rs230288806
  • Variation Type
    SNP
  • Alleles
    C/G
Genome Location and Flanking Sequence
  • Location
    Chr12:83572784 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                      gccagggct atacagagaa accctgtctc
    gaaaaaccag aaAAAAAAAC CACATGAGTA TTTGTGGAAA AGATGCAGAA CAAGTTATTC
    CTGCCTGGTC ACGTCTCTTC TCTAGGACAG AGGATTACAC TGTCAGTGGT GGGAGGGGAC
    S
    TTGGGAAAGT GCTAGGAGCA GATAAAGGCG TGGGTGGCAG CCTTAGCAGT GACCATTGAG
    CATGGTGGAG CTGCCAGGCA AGAAGGAGAG CGCACAGCCA GGATGTCTGG CGTTCTGTGT
    TCCTCTCTCC TAGGAACGGA CATGGATAGG                                 
    
    S = C/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
LG/J
SM/J
ss324113675 CHEV_12_84866960 CHEVERUD SCREENING_POP f SNP G C
SNP Consensus Information
SNP Consensus Type
LG/J
SM/J
rs230288806 SNP G C
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr12:83572784 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Dcaf4 DDB1 and CUL4 associated factor 4 within coordinates
Rr257993 regulatory region 257993 1384 bp distal
Rr261746 regulatory region 261746 1217 bp proximal
Rr265648 regulatory region 265648 16 bp proximal
Rr268609 regulatory region 268609 1818 bp proximal
Rr387528 regulatory region 387528 915 bp upstream
Tssr114259 transcription start site region 114259 33 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Funding Information
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory