rs230289603 SNP Detail

Summary

• ID
  rs230289603
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:106769717 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCACCCTAT AGCCAGTAGG
  ATGGGCGGCG GGAGCATGGA TCAGAAGCGG TTCCTTGTTT TGAACTACCA CGTGGATTGC
  CGAGCCAATC AAGGGGAACG TCCACTTTGA TTCGCCGGCT TGCTCAGACC CCGCTTTAAC
  CTGGGTCAGA CGGCAGAACC TCTTAAACGA AAGGTCTCGG CCTGCCTAGT CGTTTCCCGT
  Y
  CTGGGCCTCT GAGGACCTCG CGGCAAGGCT GCGAGCAGAG GCGTTGGTCT ACCTTCCAAA
  TGGAGGCCAT GGGATCTTGG GAGGTTTTGT TCTCCACTCT TGGAGACACG AGGATGGGAA
  CTGGAGACAT TACCGCCTGG ACTGCCCTAA TGCTAAGTGC AAGGGCTTTG GCCACTCGCC
  CTGGAAGGCG GAATATGGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss378838673	MGP_WTSI_9_106794849	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs230289603					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss378838673	MGP_WTSI_9_106794849	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:106769717 () rs orientation: forward

Symbol	Name	Function Class
4930524O07Rik	RIKEN cDNA 4930524O07 gene	within coordinates
Cpgi22278	CpG island 22278	within coordinates
Dock3	dedicator of cyto-kinesis 3	307 bp downstream
Manf	mesencephalic astrocyte-derived neurotrophic factor	580 bp upstream
Rr368849	regulatory region 368849	317 bp downstream
Rr686409	regulatory region 686409	1114 bp distal
Rr686410	regulatory region 686410	997 bp distal
Rr686411	regulatory region 686411	710 bp distal
Rr686412	regulatory region 686412	542 bp distal
Rr686413	regulatory region 686413	294 bp distal
Rr686414	regulatory region 686414	within coordinates
Rr686415	regulatory region 686415	916 bp proximal
Tssr86943	transcription start site region 86943	395 bp downstream
Tssr86944	transcription start site region 86944	43 bp downstream
Tssr86945	transcription start site region 86945	31 bp downstream
Tssr91353	transcription start site region 91353	1145 bp upstream
Tssr91354	transcription start site region 91354	1127 bp upstream
Tssr91355	transcription start site region 91355	1121 bp upstream
Tssr91356	transcription start site region 91356	1080 bp upstream
Tssr91357	transcription start site region 91357	598 bp upstream
Tssr91358	transcription start site region 91358	571 bp upstream
Tssr91359	transcription start site region 91359	548 bp upstream