rs230301395 SNP Detail

Summary

• ID
  rs230301395
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:112063974 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTCCTCTCT CTTGGGAGTA
  GCCACCTTCT CCTGCAGCCA GTCCTTGCGC TGATCTGTCC GCCCCTCTGC GACCTGTGGT
  CCCACCAGCA ATGCGGGAAC CAGGTGACTG TCGTTGGAGC CCGCAGCGTC TCTGCTACTT
  TGCTACTTTG CGCTCCGGCC ACTTCCCCAG GTCGGGTGGG AGGAGGTGAC TGCAGGGAGC
  R
  AGTGCACGGG GCTGGCTGTC CCTGTCCCTC CCTCTCCGTC TCCCTGCCCG CTGAGTGCTC
  CCTCTTCTCT CTCTCTCTCT CTCCTCTCTC TCCTCTTCTC TCCTCTCCTC TCTCTCTCTC
  CGCTCTCTTC TCTCCTTTCT CTCTTCTCTC TCTCTCTCTC TCTCTCTCTC TCTCTCTCTC
  TCTCCCTCGC TCGCAGGATT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss378948992	MGP_WTSI_9_112137410	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs230301395					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss378948992	MGP_WTSI_9_112137410	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:112063974 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
2900079G21Rik	RIKEN cDNA 2900079G21 gene			within coordinates
Arpp21	cyclic AMP-regulated phosphoprotein, 21			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
				Noncoding-Transcript-Variant
Cpgi22409	CpG island 22409			within coordinates
Gm68368	predicted gene, 68368			119 bp downstream
Rr687420	regulatory region 687420			1915 bp distal
Rr687421	regulatory region 687421			573 bp distal
Rr687422	regulatory region 687422			within coordinates
Rr687423	regulatory region 687423			102 bp proximal
Tssr87517	transcription start site region 87517			655 bp downstream
Tssr87518	transcription start site region 87518			593 bp downstream
Tssr91798	transcription start site region 91798			1778 bp upstream
Tssr91799	transcription start site region 91799			1652 bp upstream
Tssr91800	transcription start site region 91800			1637 bp upstream
Tssr91801	transcription start site region 91801			1620 bp upstream
Tssr91802	transcription start site region 91802			1583 bp upstream
Tssr91803	transcription start site region 91803			1494 bp upstream
Tssr91804	transcription start site region 91804			1336 bp upstream
Tssr91805	transcription start site region 91805			287 bp upstream
Tssr91806	transcription start site region 91806			262 bp upstream
Tssr91807	transcription start site region 91807			84 bp upstream
Tssr91808	transcription start site region 91808			48 bp upstream
Tssr91809	transcription start site region 91809			3 bp upstream
Tssr91810	transcription start site region 91810			50 bp downstream
Tssr91811	transcription start site region 91811			236 bp downstream
Tssr91812	transcription start site region 91812			546 bp downstream
Tssr91813	transcription start site region 91813			605 bp downstream
Tssr91814	transcription start site region 91814			924 bp downstream
Tssr91815	transcription start site region 91815			948 bp downstream
Tssr91816	transcription start site region 91816			983 bp downstream
Tssr91817	transcription start site region 91817			994 bp downstream
Tssr91818	transcription start site region 91818			1013 bp downstream
Tssr91819	transcription start site region 91819			1034 bp downstream
Tssr91820	transcription start site region 91820			1060 bp downstream