rs230331168 SNP Detail

Summary

• ID
  rs230331168
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:126047664 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGCCGTCTT AGCCACAGCA
  GTACCAGATC CCATGGCAAT GCCAATCTCG GCCTTCTTCA GAGCAGGGGC ATCATTGACA
  CCATCCCCTG TCTGAAGACG GAAGGAGAGA GTGAGAAACT CCAGGTTCCA GATGCCTTCT
  ATTTCCCCTC CTCAGACTCC ATGCAGAGTC TCCCCCCACA CACACACCCA GCATGCGTGG
  R
  GACACTCAGA GCCTTGACCC GGGCAGCCCT CTGCGACTTC TCACCATGGC TGTGATCTCA
  TCGTAGGACT GCAGGTACTC CACAATCTTG GACTTGTGTG AGGGCTCCAC ACGAGCAAAG
  CAGCAGGCGC GTCTGCAGGC CTCCCGCTGC TCGGCCAGGG GCAGATCGTC AAACTCACGG
  CCAGTGTAGG CACGGTCTGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss373068771	MGP_WTSI_7_133592006	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs230331168					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss373068771	MGP_WTSI_7_133592006	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:126047664 () rs orientation: forward

Symbol	Name	Function Class
Atp2a1	ATPase, Ca++ transporting, cardiac muscle, fast twitch 1	within coordinates
Tssr2394	transcription start site region 2394	852 bp upstream
Tssr69023	transcription start site region 69023	578 bp downstream
Tssr74664	transcription start site region 74664	1904 bp upstream
Tssr74665	transcription start site region 74665	1578 bp upstream
Tssr74666	transcription start site region 74666	1519 bp upstream
Tssr74667	transcription start site region 74667	1491 bp upstream
Tssr74668	transcription start site region 74668	1288 bp upstream
Tssr74669	transcription start site region 74669	1274 bp upstream
Tssr74670	transcription start site region 74670	1018 bp upstream
Tssr74671	transcription start site region 74671	997 bp upstream
Tssr74672	transcription start site region 74672	980 bp upstream
Tssr74673	transcription start site region 74673	841 bp upstream
Tssr74674	transcription start site region 74674	813 bp upstream
Tssr74675	transcription start site region 74675	799 bp upstream
Tssr74676	transcription start site region 74676	590 bp upstream
Tssr74677	transcription start site region 74677	547 bp upstream
Tssr74678	transcription start site region 74678	526 bp upstream
Tssr74679	transcription start site region 74679	506 bp upstream
Tssr74680	transcription start site region 74680	488 bp upstream
Tssr74681	transcription start site region 74681	462 bp upstream
Tssr74682	transcription start site region 74682	451 bp upstream
Tssr74683	transcription start site region 74683	248 bp upstream
Tssr74684	transcription start site region 74684	146 bp upstream
Tssr74685	transcription start site region 74685	110 bp upstream
Tssr74686	transcription start site region 74686	102 bp downstream
Tssr74687	transcription start site region 74687	156 bp downstream
Tssr74688	transcription start site region 74688	260 bp downstream
Tssr74689	transcription start site region 74689	329 bp downstream
Tssr74690	transcription start site region 74690	750 bp downstream
Tssr74691	transcription start site region 74691	793 bp downstream
Tssr74692	transcription start site region 74692	1660 bp downstream
Tssr74693	transcription start site region 74693	1686 bp downstream
Tssr74694	transcription start site region 74694	1809 bp downstream