rs230343802 SNP Detail

Summary

• ID
  rs230343802
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:54970504 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACCTGAAGT TGCCTCACTG
  CATACCAGGG TAGTCTTTCT CCCACGTTCA GATCCGGACA TGCCATTTGC TAGCCAGTTG
  ACTCTGTTCA TCGTTGCAAT CTATTTCCTC TTTTTAAAAT AGAACGACAC AAAACACCCA
  TGTTGTTGCT CTTGAAATGA AGATAGGAGA GCAAACTGAA GGTCTAGAGC AATGACTGCC
  K
  TTGGCCCTCA GAAATTAATC TAAATTCAAC TCCACACTGA CAGGTGCCAG AATTCCTGGA
  GAAATGACTG AATCTTAGGT CAAAGCTGGG AGTGAAAATT ACCTCTTGAA AGAACAATAA
  TCCAGAAAAT GAGAACCCCA AGATGAACAA GGTCATTCCT AAAAGACCAT TCACTAGACA
  AAGCGAGAAC AACTTAAGGA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss368375039	MGP_WTSI_6_54943513	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs230343802					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss368375039	MGP_WTSI_6_54943513	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:54970504 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17470	CpG island 17470	171 bp distal
Ggct	gamma-glutamyl cyclotransferase	557 bp upstream
Rr366742	regulatory region 366742	408 bp downstream
Rr630884	regulatory region 630884	862 bp distal
Rr630885	regulatory region 630885	711 bp distal
Rr630886	regulatory region 630886	79 bp distal
Tssr61105	transcription start site region 61105	641 bp upstream
Tssr61106	transcription start site region 61106	612 bp upstream
Tssr61107	transcription start site region 61107	598 bp upstream
Tssr61108	transcription start site region 61108	583 bp upstream
Tssr61109	transcription start site region 61109	562 bp upstream