rs230346297 SNP Detail

Summary

• ID
  rs230346297
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172035979 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACATGTGATT AGGTCGATTA
  GATATCTGGT TTCTGCTTTA TATACTTCTG TCGCTTTCCC TAAGAATACT TCCTGGATTT
  GACTGTGGAG AGTGACAACT TTTCTAATCT TAGGACTCAT TTTTCTATAC TTAGACATCC
  AATAACTTTG CTCTGCCTTA ACAAAAACTA GTAGCATGCA TAATATGGTG ATATACCACC
  R
  TAAGACTTAG AATGTTGAGG CAGGATTATT CCCATCTTCG GCTACATAGT GATACCCTAT
  CCATAAACAA CAACAAAGGA TGTTTCCTTA TTTAGAAGCT TATTCGGGAG TTTGGTCCTT
  TCATGCTCCC ATCTTGTATA TGTTTACTCC CACCTGAGCC TGTCCTGCGG AGTACGGGTG
  CGCACGAGTC CTTTTTATAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss352400978	MGP_WTSI_1_174138543	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs230346297					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss352400978	MGP_WTSI_1_174138543	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172035979 () rs orientation: forward

Symbol	Name	Function Class
Casq1	calsequestrin 1	1482 bp downstream
Cpgi1038	CpG island 1038	1459 bp distal
Gm17224	predicted gene 17224	within coordinates
Pea15a	proliferation and apoptosis adaptor protein 15A	1681 bp upstream
Rr396578	regulatory region 396578	872 bp downstream
Rr423485	regulatory region 423485	1619 bp distal
Rr423486	regulatory region 423486	1118 bp distal
Tssr294	transcription start site region 294	1779 bp upstream
Tssr295	transcription start site region 295	1729 bp upstream
Tssr296	transcription start site region 296	1653 bp upstream
Tssr297	transcription start site region 297	1619 bp upstream
Tssr10179	transcription start site region 10179	1911 bp upstream
Tssr15164	transcription start site region 15164	1747 bp upstream
Tssr15165	transcription start site region 15165	1657 bp upstream
Tssr15166	transcription start site region 15166	1626 bp upstream
Tssr15167	transcription start site region 15167	706 bp upstream
Tssr15168	transcription start site region 15168	1694 bp downstream
Tssr15169	transcription start site region 15169	1781 bp downstream
Tssr15170	transcription start site region 15170	1808 bp downstream
Tssr15171	transcription start site region 15171	1822 bp downstream
Tssr15172	transcription start site region 15172	1904 bp downstream
Tssr15173	transcription start site region 15173	1996 bp downstream