rs230356040 SNP Detail

Summary

• ID
  rs230356040
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:45947875 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGCACCCATT ATGCAGATCG
  TAAGCTGAAG TTCACTAACA AAAACCCAGG TGTGTATAAG TACGCCCCAC ATTGAAGATC
  TGATACTGGA AACCGGAGCT TTCTTTCCAC CTCACCCAAT GCCTATCTCC TCTTGGCCTC
  AGTTTTCATG TGAAGAAAAT GGAATGGGCT CCACGCTTCC AGTTTGGACG CTGGATAATG
  Y
  CTATTTCTCA CAACTGTTTT CCCAGGCACC GCTCCCTCCC GGGCCGCATC CCTCAGAGGT
  TCTCATAGGA TTTCGCGGAA GGGACGGTCC CGGAGGGGCA ATGCCTGGCT TCTGTCATCT
  TGACCCGGGA GAGCTTATTT AGCCTTAGCT CTGAGGCAGC TGGAGAGCTG GGCTGACTCC
  AGACGGTCGC GGGTGCTTGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss383234395	MGP_WTSI_11_45870550	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C	C	C	C	T	T	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs230356040					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C	C	C	C	T	T	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss383234395	MGP_WTSI_11_45870550	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:45947875 () rs orientation: forward

Symbol	Name	Function Class
Adam19	ADAM metallopeptidase domain 19	within coordinates
Cpgi2772	CpG island 2772	421 bp distal
Cpgi2773	CpG island 2773	14 bp proximal
Gm72342	predicted gene, 72342	within coordinates
Rr402508	regulatory region 402508	1042 bp downstream
Rr445869	regulatory region 445869	1046 bp distal
Rr445870	regulatory region 445870	within coordinates
Rr445871	regulatory region 445871	961 bp proximal
Rr445872	regulatory region 445872	1125 bp proximal
Tssr3474	transcription start site region 3474	1081 bp downstream
Tssr101088	transcription start site region 101088	980 bp downstream
Tssr101089	transcription start site region 101089	951 bp downstream
Tssr101090	transcription start site region 101090	873 bp downstream
Tssr101091	transcription start site region 101091	818 bp downstream
Tssr107582	transcription start site region 107582	1061 bp downstream
Tssr107583	transcription start site region 107583	1126 bp downstream