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rs230369830 SNP Detail
Summary
  • ID
    rs230369830
  • Variation Type
    SNP
  • Alleles
    G/T
Genome Location and Flanking Sequence
  • Location
    Chr10:103202313 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                ACAGTGCTTT CCATTTTCTG
    AAATTGCTTA CCCTGCAGTA TGAAGATTCC AGTCTCAACC TATAGAGCAA TGTATGTGTA
    TGTGTAAGCA AACATTTGCT TGCCTCTAGT ATGTGAGGGA AGAACCACAT TATGACCTAA
    GATCGTCACT AAAAGCTTCT TGTAGATGTC TTCGTTTTAT TTTTTAATGA AAAAGCAACA
    K
    CAGTGATAGA AAAGAGGCAC CCCAGGGATT AACTTTGACA TTTAATTTTT TTTTTTAAGT
    GAATTTGAAG ACAGGCTGGT GGAAAAATCT CTCGGTTCTT TGAAAAGGAT TAGTGGCAAT
    GTTCTTACCT GAAATCTAGG TTCTTGTGAT TCCTTTGAAA GATATTCCTC ACTTTATGAG
    AACATCTCCA ACAGTGGCTT                                            
    
    K = G/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss381552175 MGP_WTSI_10_102829086 EVA_MGPV3 EVA_MGPV3 f SNP T T T T T T T T T T T T T T T T T T T G T T T T T T T T T T T T T T T T T T T T G T T T T T T T G T T T T
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs230369830 SNP T T T T T T T T T T T T T T T T T T T G T T T T T T T T T T T T T T T T T T T T G T T T T T T T G T T T T
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss381552175 MGP_WTSI_10_102829086 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP G/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr10:103202313 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
6430590A10Rik RIKEN cDNA 6430590A10 gene 737 bp downstream
Cpgi2165 CpG island 2165 996 bp proximal
Gm66970 predicted gene, 66970 46 bp downstream
Rr385217 regulatory region 385217 1545 bp upstream
Rr438423 regulatory region 438423 866 bp proximal
Rr438424 regulatory region 438424 1402 bp proximal
Slc6a15 solute carrier family 6 (neurotransmitter transporter), member 15 1331 bp upstream
Tssr95604 transcription start site region 95604 1200 bp upstream
Tssr95605 transcription start site region 95605 1240 bp upstream
Tssr95606 transcription start site region 95606 1296 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory