rs230385948 SNP Detail

Summary

• ID
  rs230385948
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172331931 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGGCCTCA TCTCCATTGC
  TTGGTTTGTG ACCCTGCTTG ACACCCACCC TGTCTTCACT TCTCCCATGC TGCCTTCCCC
  TTTCACTTAC TGAGAATGAG AACTCTCGTG ACAGTACTGG GCCCACCTGG CTGAGACAGC
  TAATCACGCC GTCTGCAAAT GCATGCACAC CCTGCCTTTT CAACTGTGTA AGATGATGTA
  C
  CTCCCATGTT TGGGAATCAC TATATGGGCA CCTTCGGTGG GAGAGTAGGC AAGGGGGAGG
  GGGGGCTAGT CTGCCGATCA CGATTCCTAG AAGGGAAAGG AAGGAATTCA TTTTGTCTGC
  TAGGCTTTTC TCAGGAAGTC CCCCTTGCCC GCTGAGACGC GGGCCTACCT TTCCCAGCAA
  GCCCACCCAG ACTGCCTTTG                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320125769	CHEV_1_174434495	CHEVERUD	SCREENING_POP	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs230385948					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172331931 () rs orientation: forward

Symbol	Name	Function Class
Rr29013	regulatory region 29013	330 bp distal
Rr29014	regulatory region 29014	within coordinates
Tagln2	transgelin 2	within coordinates
Tssr10218	transcription start site region 10218	1772 bp downstream
Tssr10219	transcription start site region 10219	899 bp upstream
Tssr10220	transcription start site region 10220	1387 bp upstream
Tssr10221	transcription start site region 10221	1429 bp upstream
Tssr10222	transcription start site region 10222	1515 bp upstream
Tssr10223	transcription start site region 10223	1862 bp upstream