rs230394529 SNP Detail

Summary

• ID
  rs230394529
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr18:6134504 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGCATTGAA TAAATATTTT
  CTAATAAAAA CGCCAAATGA TTACAACTAA TAAGCTGTTC TGCAGCATTT ACATATTTCA
  TCTATGCCTC ACAAATGGAA TAGTATATTA AAAAACTGGA AGTATTGACA ATTGTATAAG
  CACAACTAAT CTACACAAGT GGTGTCATAT CATGACTCAA TGAGCAATCT CCAACCCCTG
  K
  GGTTGATAAA GAACAGGAGA TAGTCAACAA ATACTAGGAA TTACACACAC ACACACAGAT
  GAGGAGAGGG AGAGAGAGGA AAGGGGGAGA AGGAGAATAT GAATTATACT TTGTTTCCCA
  GACAAAAAAA ACTCCCCAGA AAGATGTAAA GTTATGTGTG CCCTGTTGGC CTAAACTTCG
  ATGGCATGGC TTAAATCACA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325520318	CHEV_18_6134502	CHEVERUD	SCREENING_POP	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs230394529					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:6134504 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Arhgap12	Rho GTPase activating protein 12			Intron
				Noncoding-Transcript-Variant
Cpgi9676	CpG island 9676			782 bp proximal
Gm58680	predicted gene, 58680			1712 bp upstream
Rr405549	regulatory region 405549			1432 bp upstream
Rr533476	regulatory region 533476			163 bp proximal
Rr533477	regulatory region 533477			1374 bp proximal
Rr533478	regulatory region 533478			1723 bp proximal
Tssr149959	transcription start site region 149959			1916 bp upstream
Tssr152338	transcription start site region 152338			723 bp downstream
Tssr152339	transcription start site region 152339			1355 bp downstream
Tssr152340	transcription start site region 152340			1392 bp downstream
Tssr152341	transcription start site region 152341			1553 bp downstream