rs230396358 SNP Detail

Summary

• ID
  rs230396358
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:23704695 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCACATCTA GCACTTGGAT
  TTCAAGCCTC AGATCTGTCT CTGTTTGGTG TCTTGGCTTT TCATTTTTGC CCAAACTAGG
  AATATACCCA GCATGCATAG ATACACACAC CTTTAGACTT ACACTCTCTC TTCTCAAATC
  CTACCTCCTT GAGTAAAGGA AGCCCTGGCA ACATCACCCA CTTTTCTTAT TTTTCTTATT
  Y
  ATTCTTATTA AAACACACAC TCCCCTCCCC CAATTGCATT GGGTACAGAA GAAAAATGGA
  AGCATATTCT CTGGTGTCCA GAGACAGGCT TGGATGTTAG TTAGGATCTA GCCTGAGACT
  CAGAGTTTGT CCCTAGGGTT TGTCTTTTGA TGCTGTGTAA CCTCACAGCT TCTCCACAGC
  ACACTGACGT CTTTGATTTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324289673	CHEV_13_23612394	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs230396358					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:23704695 () rs orientation: forward

Symbol	Name	Function Class
Gm61424	predicted gene, 61424	within coordinates
n-TQttg4	nuclear encoded tRNA glutamine 4 (anticodon TTG)	1404 bp downstream
n-TQttg5	nuclear encoded tRNA glutamine 5 (anticodon TTG)	841 bp downstream
n-TSgct4	nuclear encoded tRNA serine 4 (anticodon GCT)	1345 bp upstream
Rr281116	regulatory region 281116	294 bp distal
Rr281117	regulatory region 281117	905 bp proximal
Rr403644	regulatory region 403644	1298 bp downstream
Rr403645	regulatory region 403645	725 bp downstream