rs230399082 SNP Detail

Summary

• ID
  rs230399082
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:101941620 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGCCACCACC ACTGCAGGCA
  CATGTAGACT TTTTAAGAGA TAATACCTTG TGTTGGACTG GACCCCACAG TTCTTTATAA
  TTATTACAAA GTGTCACCTA AGATATGGAA TGGATGGAGC AAAACCGAAA CCGTTGAGAT
  CATAACACGG ACTGGAAACC AAGCAGAAAG CCTTGTTTTT AAAAGGCAAA TGGCTACGTG
  Y
  GGGTTTCACA ATCAGGAGAG TTGGACGAGG AGACAGACGC CTGGGCGACC GCGCCCCGCT
  TCTGGATAGG AGCTGCATTC CCTATTGTGG GCTCAAGAGT CGGATCCTTG AGAACCCTTC
  CGAGTCCCCC GAGAGCCAGG CCATCAGATC GTCCCCAGAG CAGTCTTTGT AAAAGGCGTG
  GGGCGGGCAG CGCGCAGGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss387128037	MGP_WTSI_12_103213571	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs230399082					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss387128037	MGP_WTSI_12_103213571	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:101941620 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5001	CpG island 5001	within coordinates
Cpsf2	cleavage and polyadenylation specific factor 2	627 bp upstream
Gm59441	predicted gene, 59441	1605 bp downstream
Ndufb1	NADH:ubiquinone oxidoreductase subunit B1	within coordinates
Rr387709	regulatory region 387709	within coordinates
Tssr3923	transcription start site region 3923	522 bp downstream
Tssr114729	transcription start site region 114729	5 bp upstream
Tssr114730	transcription start site region 114730	364 bp upstream
Tssr114731	transcription start site region 114731	604 bp upstream
Tssr114732	transcription start site region 114732	645 bp upstream
Tssr117383	transcription start site region 117383	322 bp downstream
Tssr117384	transcription start site region 117384	404 bp downstream
Tssr117385	transcription start site region 117385	552 bp downstream
Tssr117386	transcription start site region 117386	574 bp downstream
Tssr117387	transcription start site region 117387	618 bp downstream
Tssr117388	transcription start site region 117388	662 bp downstream
Tssr117389	transcription start site region 117389	843 bp downstream
Tssr117390	transcription start site region 117390	904 bp downstream
Tssr117391	transcription start site region 117391	921 bp downstream
Tssr117392	transcription start site region 117392	1516 bp downstream
Tssr117393	transcription start site region 117393	1536 bp downstream