rs230405602 SNP Detail

Summary

• ID
  rs230405602
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:23493795 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTATTTGAAG TCTTGCCAAT
  TTTAATCAAT TTCAGAATAC ATTCGCCAAA ACCATTTAGA TAACGCGGAG GGTGGCAGGC
  CGCCTCCAGA TCAAGTCTCT CTACTGGACT GCTAGGTAGT GGCGGGGATT CTAGACTAGT
  GGCTCAGGAG AGGCAGGGTA TTTGTTCCCA GAAGATCTGC GTTGCTCCGG GCCAGGGGGA
  S
  GTGGTCTCTC CGAACACTAT CGCGGTCCGT GGAGTCACTG CGTGTTGAAA AGAGTGGAGG
  ACCAGCGCGC CCTAGTACGT CTCAAGGACG AGTCCTCTCG GCTCATCCAC GCCTGTCCTG
  GGTCTCAGTG ATGCCAAGCT CCTCTCAGCT TAAACTGTAG CTGTTCCAGA AGTTTTGGGG
  ATCCCGGGGC TTCGTGGCGT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324288362	CHEV_13_23401494	CHEVERUD	SCREENING_POP	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs230405602					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:23493795 () rs orientation: forward

Symbol	Name	Function Class
4930557F10Rik	RIKEN cDNA 4930557F10 gene	within coordinates
4930597G05Rik	RIKEN cDNA 4930597G05 gene	within coordinates
Cpgi5346	CpG island 5346	within coordinates
n-TIaat9	nuclear encoded tRNA isoleucine 9 (anticodon AAT)	500 bp upstream
n-TVcac11	nuclear encoded tRNA valine 11 (anticodon CAC)	1924 bp downstream
Rr475820	regulatory region 475820	1700 bp distal
Rr475821	regulatory region 475821	within coordinates
Tssr121691	transcription start site region 121691	528 bp downstream