rs230408603 SNP Detail

Summary

• ID
  rs230408603
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:189074645 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GTGTGTGTG TTGGGCTGAT AAATTTCTTG
  AAGGAGTTTA ATTCTTTTAA GCTATGTCCT TATATTTAAT TAGCAGAAAC AGATAATGCA
  CAATTGGCAG ACTTAATGGA TAGAATCTGG TGGCATACAG AATAAATATT TTAAAAACAA
  M
  ACACCCCCCC CCCCACCCCG CGCGCGCGCC TTTCCTGAAC CCTATCTAAT CTAGATACTG
  GATTCCCAGC CTCTACTGTT CGGTGAGAGG CGAGGCAGGT CTTTCCACAC ACCCTTCACA
  CCATCACTAT CGCTCCCCTC CCCCATGGTC                                 
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320190721	CHEV_1_191166327	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs230408603					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:189074645 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
A430027H14Rik	RIKEN cDNA A430027H14 gene			603 bp upstream
Cpgi1195	CpG island 1195			286 bp proximal
Kcnk2	potassium channel, subfamily K, member 2			Intron
				Noncoding-Transcript-Variant
Rr425779	regulatory region 425779			607 bp distal
Rr425780	regulatory region 425780			3 bp proximal
Rr425781	regulatory region 425781			744 bp proximal
Rr425782	regulatory region 425782			897 bp proximal
Rr425783	regulatory region 425783			994 bp proximal
Rr425784	regulatory region 425784			1249 bp proximal
Rr425785	regulatory region 425785			1507 bp proximal
Rr425786	regulatory region 425786			1547 bp proximal
Rr425787	regulatory region 425787			1734 bp proximal
Tssr15712	transcription start site region 15712			894 bp downstream
Tssr15713	transcription start site region 15713			1259 bp downstream