rs230422149 SNP Detail

Summary

• ID
  rs230422149
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:85608759 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GACCCATCA GTCCCTACAT ATTGAATTCG
  TGGGATGATT TGCAGAGAGG ATTAAAGGAC TCAGGATCTC CATCCTGACA GAAAAGATCA
  TGAAAGCATC TTTATAGTCC ATACACTCTC TACTATTTAG GTAGTCAGAG AATTCCTATG
  M
  CCATTTTAGT TCTAGATTAC TGGTTTTATT TTCCCTTTTC GTCCCAGATA CTTCTGACAC
  TGAGAGCTCT ATCATCATTA GAAGACGGAA AAGGACAGGA CGTAAGAACA ATTTAAAATT
  CTAGATGTAG CAATTACTTC TCTGTGTTAC                                 
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319826437	CHEV_1_87577613	CHEVERUD	SCREENING_POP	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs230422149					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:85608759 () rs orientation: forward

Symbol	Name	Function Class
Rr414376	regulatory region 414376	364 bp distal
Sp100	nuclear antigen Sp100	within coordinates
Tssr7681	transcription start site region 7681	33 bp upstream
Tssr7682	transcription start site region 7682	1251 bp upstream
Tssr7683	transcription start site region 7683	1350 bp upstream
Tssr7684	transcription start site region 7684	1370 bp upstream