rs230428579 SNP Detail

Summary

• ID
  rs230428579
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:72776812 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGCCAGTGG GAGGGGGTGA
  GCGCTACGCC CAGTTTGGCC AGGCTGGGCT TCACCGCTGC AGGCTGCGGG CCGGGGCGGG
  AGTGGAGAGA GGCCGCTGCG CGACAAAAGC CTGCACGTCC CTCCCTCCAG CCTCTGGCTG
  CCACTCCTCC GCCTTCCCCT CCACTTCCCA CCCCTCCGCT CTCTGCCCCT CCCCCGGCCT
  Y
  AGCGGGGCCT CGGCGGCGGG CGGAGCAGGG GAGGGGCGGG CACCAGAATA TGCAGATGAG
  AGTGTGACGG ACAGCTCGGC GTTCCAATGT CCCTCGGAAA CTCGAGCGCT CCTTCCTCAA
  CTCCTCACTC CTGACTGCAG ACTCCCCCAA ATCCCGACCG CCGGCCTGGC GCGCGGCTGC
  GCCCACCGGC TCCGCGCTGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss389037622	MGP_WTSI_13_72766141	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs230428579					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss389037622	MGP_WTSI_13_72766141	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:72776812 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5831	CpG island 5831	within coordinates
Cpgi5832	CpG island 5832	1771 bp proximal
Gm20554	predicted gene, 20554	129 bp upstream
Irx2	Iroquois homeobox 2	127 bp upstream
Rr273617	regulatory region 273617	1012 bp distal
Rr281620	regulatory region 281620	within coordinates
Tssr120305	transcription start site region 120305	93 bp upstream
Tssr120306	transcription start site region 120306	109 bp upstream
Tssr120307	transcription start site region 120307	138 bp upstream
Tssr123170	transcription start site region 123170	188 bp upstream
Tssr123171	transcription start site region 123171	107 bp upstream
Tssr123172	transcription start site region 123172	86 bp upstream