rs230445389 SNP Detail

Summary

• ID
  rs230445389
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:3727563 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACATAGTCTT TAAATACTTG
  AACAGTCACC AGGAAATTGA CTTGGGAGCC ACCAGGGAAT TGCTCATCCC TTTCTTTTCC
  CTACACTGGG CAGTTCTAGA CCTGAGGCTT TCTGAAGGTA CCTCTGGGGA AGTGTGTGGA
  TGGTAGGTGG GGAGGAATTC AGGCCCTAAG TCACCCACTC TGGTGAGAGG GAGGGAGAGA
  R
  AAGGTGTCTG GTGCCGACTT CCTGAGGTTA GCCTTAGTTC CTTGAGGCAG CGAAGGCTGC
  AGTCACCCCT TCCCTGTGCA GCACAGGAAG CTCAGAGAGC TTGCCCCAGA GCTGTTCATT
  AGACTAGTTA ACCGTGTTAC CAGAGCGCTC CAGGATCAGA TGGAGAACAG CATCCACTCG
  GATACGGTTT GTTCTCTGAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320205088	CHEV_2_3643798	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs230445389					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:3727563 () rs orientation: forward

Symbol	Name	Function Class
Fam107b	family with sequence similarity 107, member B	within coordinates
Rr367092	regulatory region 367092	1126 bp upstream
Rr396754	regulatory region 396754	297 bp upstream
Tssr15911	transcription start site region 15911	648 bp upstream
Tssr22380	transcription start site region 22380	194 bp downstream
Tssr22381	transcription start site region 22381	261 bp downstream