rs230445961 SNP Detail

Summary

• ID
  rs230445961
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:46120576 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTGAAATGG AGCAGACGCT
  CGCTGGCTGC CTGTGGGAAA GGCGTCTGCT TTGTGCTACA GGTATTGTTC CGGCTGGCCT
  GTGAAACCGA CAAAGCTTCT GTTATTCGCT TCACTTGCAG ACAGCTTTCA TATAAAAAAA
  AAAACAAATT TAATCTAAAA TATTTTTATA ACAGAAAATA TTGGTTGCCA TGTTTTTGGC
  R
  TAACTGAGAT GTTTTTATTC CAGCTCATAA TCTGTAAACT GTCCAATCCA CCTCCACTCT
  ATTTTTAGAC ATCTTATATT TAGAGAATTT TCAAGGGGAA AAAACCTCCT AATATTGTAA
  TTATTACGTT GGTGCAAGCA GTTAATTTGC ATTATTTTAA CAACCTTAAA CATATTAAAA
  CACATAATTC ATATTAGACG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss388492007	MGP_WTSI_13_46062469	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	G	A	A	G	A	A	A	A	G	A	A	A	A	G	A	A	A	A	A	G	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs230445961					SNP	G	G	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	G	A	A	G	A	A	A	A	G	A	A	A	A	G	A	A	A	A	A	G	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss388492007	MGP_WTSI_13_46062469	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:46120576 () rs orientation: forward

Symbol	Name	Function Class
5033430I15Rik	RIKEN cDNA 5033430I15 gene	592 bp downstream
Cpgi5536	CpG island 5536	797 bp distal
Gm56575	predicted gene, 56575	804 bp upstream
Rr403752	regulatory region 403752	1900 bp downstream
Rr478835	regulatory region 478835	1797 bp distal
Rr478836	regulatory region 478836	815 bp distal
Rr478837	regulatory region 478837	858 bp distal
Rr478838	regulatory region 478838	314 bp distal
Rr478839	regulatory region 478839	328 bp distal
Tssr119584	transcription start site region 119584	1869 bp downstream
Tssr119585	transcription start site region 119585	1624 bp downstream
Tssr122341	transcription start site region 122341	775 bp upstream