rs230448104 SNP Detail

Summary

• ID
  rs230448104
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:152068604 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACTTCAGCT CCCAGGATGC
  TTCGCGCGAA AGGTCGCGCA TGCTTCGGGA CTTGCCGGCT GGTCGCTCTC TCGCTAGGCG
  TAGTGCAGGA AACACGCCAT CTTCGGCTGT GTCAAACCAT CGTTTGTATG CCTGATGGGA
  CGCTGAAGTT TTGTCTAGTC ACCTATCACA GGTTCTGACT TAAATGCGCT TCTCTGTTAG
  W
  ATCCTATTAA ACCTTACGAA GAGCATTCCA TTCAGCTTCC AAGTCACCGA ACGCTCCCAG
  ATGATATAAA GCCAGTCGGC GGGGGCTGCG CTAAGTCAGA GCCTCCGAGG GCGGGGCGCC
  TCCGCCTTTT CCGGCTCCGC CCCGCCTCTG GTTGGGAGGG GGCTTCCGCT TCCGGCAGCG
  GAGGCTGCAG CCTCGCTCTG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356147181	MGP_WTSI_2_152052420	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs230448104					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356147181	MGP_WTSI_2_152052420	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:152068604 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12441	CpG island 12441	within coordinates
Csnk2a1	casein kinase 2, alpha 1 polypeptide	155 bp upstream
Gm57421	predicted gene, 57421	within coordinates
Rr55821	regulatory region 55821	within coordinates
Rr374080	regulatory region 374080	1168 bp downstream
Rr397394	regulatory region 397394	within coordinates
Tssr20780	transcription start site region 20780	110 bp downstream
Tssr20781	transcription start site region 20781	124 bp upstream
Tssr26784	transcription start site region 26784	37 bp downstream
Tssr26785	transcription start site region 26785	547 bp downstream