rs230451395 SNP Detail

Summary

• ID
  rs230451395
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:40519542 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CCGGGCTAG GGAGGTAACT TCCCCAGTGC
  GGTGGAAAAT CAGTGTCTGG GGACCCAGTC CTGGGCGGTA CCAAACGCTT TGCCAAACCC
  GAAGTGAAAC AAAAAGTAGG TGTAAAAGTT CGCGCCTCTG TTGGAGACAG CCGCGCACCC
  M
  CTCCCTGCCT GCCGCGCACC CCCTCCCTGC CTGCCGCGGT ATTGGGCTGC ACCCGGGGAC
  TTCGGGTGGG TCCCACTCAC GGCGCCTGGA CACTGTGTAG GGCGGGCTTC AGTTTGCCAC
  TGGTCAAGGA GCGGAGTCCC CACTGGGAGG                                 
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324932668	CHEV_15_40487692	CHEVERUD	SCREENING_POP	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs230451395					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:40519542 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7065	CpG island 7065	within coordinates
Gm63080	predicted gene, 63080	within coordinates
Rr406269	regulatory region 406269	1720 bp proximal
Rr501588	regulatory region 501588	1101 bp distal
Rr501589	regulatory region 501589	538 bp distal
Rr501590	regulatory region 501590	37 bp distal
Rr501591	regulatory region 501591	1345 bp proximal
Tssr4586	transcription start site region 4586	844 bp downstream
Tssr131170	transcription start site region 131170	1255 bp downstream
Tssr131171	transcription start site region 131171	1225 bp downstream
Tssr131172	transcription start site region 131172	1142 bp downstream
Tssr131173	transcription start site region 131173	1092 bp downstream
Tssr131174	transcription start site region 131174	1064 bp downstream
Tssr131175	transcription start site region 131175	921 bp downstream
Tssr131176	transcription start site region 131176	880 bp downstream
Tssr131177	transcription start site region 131177	825 bp downstream
Tssr131178	transcription start site region 131178	789 bp downstream
Zfpm2	zinc finger protein, multitype 2	within coordinates