rs230472489 SNP Detail

Summary

• ID
  rs230472489
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:175459282 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTATACGTT TCAAATGAAG
  TAGAGATGTC AAAGTGATGA GACACCCTCA AACCACACAT TTGAGTAGAG ATGCAGGGTG
  TTCACCATCT TGCCCATGGC AAAGCATGAG CTAGATTCTA AAGTCCTAGG CAAGAAAAAA
  ACAAACAAAG CAAAACTCTG GTCAGTCTAG TTACACCTCT AGAAATCCTA CTCAGGAGAT
  K
  ATTATGACAG CAGAGAATGT TTCCCAGCAG AGACAGTTAA GGCAACAAGC CCACAAAGTC
  CTTTCAGGTC AAATTCGTGG TTGTTCTCAG TAACAGCAGG AATTAGCTAT GAATTCAGGT
  CATCTCCCTC TGAGAAAGGG AAGACGCTTC AGAACCCCAG ATAACACAAG TTTCATTCAA
  AGCCACATTT CGAATGAAAA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320151889	CHEV_1_177561847	CHEVERUD	SCREENING_POP	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs230472489					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:175459282 () rs orientation: forward

Symbol	Name	Function Class
Kmo	kynurenine 3-monooxygenase	477 bp upstream
Rr396618	regulatory region 396618	102 bp upstream
Rr423839	regulatory region 423839	within coordinates
Tssr10313	transcription start site region 10313	252 bp upstream
Tssr10314	transcription start site region 10314	280 bp upstream
Tssr10315	transcription start site region 10315	299 bp upstream
Tssr10316	transcription start site region 10316	328 bp upstream
Tssr10317	transcription start site region 10317	348 bp upstream
Tssr10318	transcription start site region 10318	380 bp upstream
Tssr10319	transcription start site region 10319	388 bp upstream
Tssr10320	transcription start site region 10320	404 bp upstream
Tssr10321	transcription start site region 10321	425 bp upstream
Tssr10322	transcription start site region 10322	439 bp upstream
Tssr10323	transcription start site region 10323	453 bp upstream