rs230477762 SNP Detail

Summary

• ID
  rs230477762
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:28046666 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CTTCCTCTG AAGTTTAGTT TAGTCTAAGC
  CCTTCGtcct ttttcattag ctgttgccat gtacacatat gtacatgtat acttatatat
  tcctaagtac aatctagcct gtgtactcgt gcgtatgact tggtgttgtg cttctcccag
  R
  ggagatcgct tctgctagga gtcccttgcc tttattcttt gtgtagggct ggggccttgt
  gggctttcgg gcatcctgtt agcatgacaa ttgtccttgt tgggctcctg tgcaggcagc
  catgttgctg agactttatt gctatggctt                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325349859	CHEV_17_27964637	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs230477762					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:28046666 () rs orientation: forward

Symbol	Name	Function Class
Gm65125	predicted gene, 65125	446 bp upstream
Rr405125	regulatory region 405125	1189 bp downstream
Rr405126	regulatory region 405126	134 bp downstream
Rr524321	regulatory region 524321	457 bp distal
Rr524322	regulatory region 524322	1262 bp distal
Rr524323	regulatory region 524323	75 bp distal
Tssr147072	transcription start site region 147072	1648 bp upstream
Tssr147073	transcription start site region 147073	734 bp upstream