rs230479455 SNP Detail

Summary

• ID
  rs230479455
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:5846208 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTTTGCTT TTTTTTTTTT
  AAAGCTAGGG AAAGGCCAAA AAGCAAAACC TGAGAAAACA AAAGGTTGTT TTCTCAGGAA
  AAGAAAAACC TTTACAACCC TACTGACGAA TCTGCTTCCA CTAAGATGCT AGCTTGGCCA
  AGTCTGTTAT GTCCACCTGA AAAAGTCTTA GCAGAGAATT TTTGCAATCC CACCCCAACA
  R
  CTTCCTACAA AGGCTTGCTT TTCATCCGAC TTCCTACATT CCCACCCAGC ACTGGTATCA
  AACATACTAT ACCCATACTG GTTTGTTTAC TCTGCATAGG TGCTATGTAT AAAACATCTT
  AGCTATGGTT TTAATGTTAA ATTACAGGCA AGGGGAAAAT TGATGGCCTT TTCTGGTGCA
  ACCCACAGGA CCTTGGCACC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325717518	CHEV_19_5796180	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs230479455					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:5846208 () rs orientation: forward

Symbol	Name	Function Class
Malat1	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	within coordinates
Mascrna	Malat1-associated small cytoplasmic RNA	199 bp upstream
Rr543160	regulatory region 543160	1762 bp distal
Rr543161	regulatory region 543161	1274 bp proximal
Tssr5415	transcription start site region 5415	654 bp downstream
Tssr5416	transcription start site region 5416	1130 bp downstream
Tssr157645	transcription start site region 157645	173 bp downstream
Tssr157646	transcription start site region 157646	203 bp downstream
Tssr157647	transcription start site region 157647	365 bp downstream
Tssr157648	transcription start site region 157648	531 bp downstream
Tssr157649	transcription start site region 157649	631 bp downstream
Tssr157650	transcription start site region 157650	690 bp downstream
Tssr157651	transcription start site region 157651	744 bp downstream
Tssr157652	transcription start site region 157652	881 bp downstream
Tssr157653	transcription start site region 157653	998 bp downstream
Tssr157654	transcription start site region 157654	1041 bp downstream
Tssr157655	transcription start site region 157655	1078 bp downstream
Tssr157656	transcription start site region 157656	1108 bp downstream
Tssr157657	transcription start site region 157657	1230 bp downstream
Tssr157658	transcription start site region 157658	1282 bp downstream
Tssr157659	transcription start site region 157659	1385 bp downstream
Tssr157660	transcription start site region 157660	1538 bp downstream
Tssr157661	transcription start site region 157661	1559 bp downstream
Tssr157662	transcription start site region 157662	1664 bp downstream
Tssr157663	transcription start site region 157663	1723 bp downstream
Tssr157664	transcription start site region 157664	1845 bp downstream
Tssr157665	transcription start site region 157665	1852 bp downstream
Tssr157666	transcription start site region 157666	1877 bp downstream