rs230480607 SNP Detail

Summary

• ID
  rs230480607
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:132458449 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AGAAAGTCT GCGTAGGCCA GGTCACACTC
  GGATGGCATC TCCTGGTAGC ACATGGACAG CCCTTGATGC ATTCCGTGCA AACACCTAGG
  CAGGACACAC AGGTGCCCGG AGGGCCAGGT CAACCTTCTG TGACGTCGTC CATCTCCTAC
  M
  GCTGAGTGCA CAGaggcaga cttcaatcct agcttgtcac ttaaaagcta cggaacctgg
  agcaagccac ctaactaacc tcatggaact tgcttcctcg tccgtaaagt ggggCAAACT
  CAACTTCTAC TCTTGCTGGT CAGGTACGAT                                 
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321335957	CHEV_4_132287053	CHEVERUD	SCREENING_POP	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs230480607					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132458449 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14969	CpG island 14969	1063 bp proximal
Rr398540	regulatory region 398540	1419 bp upstream
Rr601049	regulatory region 601049	1296 bp proximal
Rr601050	regulatory region 601050	1381 bp proximal
Rr601051	regulatory region 601051	1398 bp proximal
Smpdl3b	sphingomyelin phosphodiesterase, acid-like 3B	1828 bp downstream
Tssr39417	transcription start site region 39417	688 bp upstream
Tssr43695	transcription start site region 43695	572 bp downstream
Tssr43696	transcription start site region 43696	1289 bp downstream
Tssr43697	transcription start site region 43697	1376 bp downstream
Tssr43698	transcription start site region 43698	1427 bp downstream
Xkr8	X-linked Kx blood group related 8	within coordinates