rs230490717 SNP Detail

Summary

• ID
  rs230490717
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30813735 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGGTCTTGG GTCCTTGGTT
  CTTGGGCTTC CATAGTGACT GACCTGAATC AGAACACCTC TGGGTTACAA CACGTATTTC
  ATGCCCCAAG GCCCAAGCTG TTGCCTGTGT GTTCCATGAT CCCAAACACC TCATGGAGGG
  AATATTAGTA TCCATCCATA CTTGACTGCA AGGAAAGGTG GACTGAAGCC CAGAGACGTG
  W
  AGTTACCTAC CCAGGATCAC ACAGTAAAAG ACAGCAGAAA CAACCTGACT AGCTCTACAC
  CCTTAACAGA GATGGCAACA GCAGCAGCCC CCACCTCAGC CCCCAGAAGA TGACATGTTG
  TTGGTTAGCT GAGAAATCCC TGAGACCTAA GGGGAAACTG AGGCAAGGCA CTAGTAAGGT
  CATATGGGGT AGCGGGGAGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322139430	CHEV_7_31899329	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs230490717					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30813735 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18835	CpG island 18835	1625 bp proximal
Hpn	hepsin	within coordinates
Rr645021	regulatory region 645021	within coordinates
Rr645022	regulatory region 645022	962 bp proximal
Tssr71932	transcription start site region 71932	390 bp downstream
Tssr71933	transcription start site region 71933	917 bp downstream