rs230492854 SNP Detail

Summary

• ID
  rs230492854
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:94205794 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGATAAGGAG TAAATTCCTT
  GCATTTTGTA GACTTCTTTT TCCGCGTAGC GCAGGTCATT TTTCTGTTGT GTGGTTTTGT
  GTAGCCCTGG GATGATCTTG GATGGTTCTT CAAAGCAGAG AGGCCTTGGG CCATCCCAGG
  AACCTTGCTG TTACATGTGG CTCCTTCCCT TGGTTTCCCT GTGGGCCACT CTGCTGTCCA
  Y
  GCCCACTAAC ATGGTCCGTT CCCCTTGTGG CTACAATCTG AGGAAGAGAA AGAATGGAGA
  GTTGAAACTT CCATCTCAGC CCAGCAGGCT GGAGATAATG TTTCTCTTTC TCCTGGTCCC
  CGGATTCAAA GTATACTTGA ATTTTATGGG GGTGATTAGC CCTCCTGAGG TGCTGCCTCT
  AGAGGGGCTG TGTTGTTGCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss389533917	MGP_WTSI_13_94839241	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	C	T	T	C	T	T	T	T	C	C	T	T	T	C	C	T	C	T	T	T	T	C	T	T	C	C	T	T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs230492854					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	C	T	T	C	T	T	T	T	C	C	T	T	T	C	C	T	C	T	T	T	T	C	T	T	C	C	T	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss389533917	MGP_WTSI_13_94839241	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:94205794 () rs orientation: forward

Symbol	Name	Function Class
Lhfpl2	lipoma HMGIC fusion partner-like 2	within coordinates
Rr274132	regulatory region 274132	1394 bp distal
Rr274133	regulatory region 274133	1007 bp proximal
Rr285346	regulatory region 285346	within coordinates
Tssr120664	transcription start site region 120664	730 bp downstream