rs230508602 SNP Detail

Summary

• ID
  rs230508602
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:69837571 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CTCCTGAGG CGCCTCTCGG CCCAGCTCTA
  GCACAGCAGC CTGCAGCTCG GCTGGGTGAC TGCTGCGATC CCCATGGGAA CCGCGCCGGT
  TGGGCGGGGC CGCCCTCCGC CCTGCTGTAC CCGCAGCCAC TTGGCCGGGT CCCTGACCCC
  S
  CGCTGCAGGT CCAGAGGGTT TAAATCGTGG AAATCACAGC ATGGAGAGTT TGCAGGGAGA
  ACGCCTGCTC CCAGGCTGTC CTAGCAGCCT GCTCGGGCTA GGGTGACCAG GTCCATACCT
  TATTACGTCC ACTCCTTGGT GTCCGTTCCT                                 
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324085697	CHEV_12_70891784	CHEVERUD	SCREENING_POP	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs230508602					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:69837571 () rs orientation: forward

Symbol	Name	Function Class
4930512B01Rik	RIKEN cDNA 4930512B01 gene	within coordinates
Cdkl1	cyclin dependent kinase like 1	within coordinates
Cpgi4702	CpG island 4702	within coordinates
Rr257091	regulatory region 257091	1030 bp proximal
Rr265514	regulatory region 265514	within coordinates
Tssr116527	transcription start site region 116527	524 bp upstream
Tssr116528	transcription start site region 116528	521 bp upstream
Tssr116529	transcription start site region 116529	499 bp upstream
Tssr116530	transcription start site region 116530	166 bp upstream
Tssr116531	transcription start site region 116531	62 bp upstream
Tssr116532	transcription start site region 116532	432 bp downstream
Tssr116533	transcription start site region 116533	497 bp downstream
Tssr116534	transcription start site region 116534	514 bp downstream
Tssr116535	transcription start site region 116535	528 bp downstream
Tssr116536	transcription start site region 116536	556 bp downstream