rs230508862 SNP Detail

Summary

• ID
  rs230508862
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:47817106 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGACAAACT GAATTGCAAT
  AATGTTGTTG GGCACTGGGC TATACTGGTA ACTGGGAAAT AGCTCCTGCT TATACCACTC
  AGTTCCCAGC ATAAGGAAGT AGGAATAGAC AGAAGCAGTT CTGGGAAAGA CAAGCTGCCA
  ACTGGATCCC CTGAAATCCC AATTGGATGT GGCTGAATGG GCCCAGCCGG GCATGATAGA
  M
  CAGTCCATAC CATACTGGAC ACCCACTCCC CATCCTGGAC CCTGGGACAA CAAGCCTTGT
  CCTGTGCCTG TCACCACAGT GTCCTCTGGG ACTAGTCCCC CATATAGAAG TGGTTCTGCT
  GCTGCTGCCT GGCACTGCCT AGCACAGCAG GCTACCAACT CATTGGACCC TTTTCCCTCT
  GCCAGTGTTG GGGACATTGT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss398348100	MGP_WTSI_17_47643130	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	A	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs230508862					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	A	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss398348100	MGP_WTSI_17_47643130	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:47817106 () rs orientation: forward

Symbol	Name	Function Class
Ccnd3	cyclin D3	within coordinates
Cpgi9262	CpG island 9262	836 bp distal
Rr370265	regulatory region 370265	1500 bp downstream
Rr370266	regulatory region 370266	1033 bp downstream
Rr370267	regulatory region 370267	1783 bp upstream
Rr528023	regulatory region 528023	1022 bp distal
Rr528024	regulatory region 528024	280 bp distal
Rr528025	regulatory region 528025	841 bp proximal
Tssr144917	transcription start site region 144917	1337 bp downstream
Tssr144918	transcription start site region 144918	1221 bp downstream
Tssr144919	transcription start site region 144919	1115 bp downstream
Tssr144920	transcription start site region 144920	1097 bp downstream
Tssr144921	transcription start site region 144921	1076 bp downstream
Tssr144922	transcription start site region 144922	1049 bp downstream
Tssr144923	transcription start site region 144923	1017 bp downstream
Tssr144924	transcription start site region 144924	999 bp downstream
Tssr144925	transcription start site region 144925	976 bp downstream
Tssr144926	transcription start site region 144926	953 bp downstream
Tssr148442	transcription start site region 148442	1805 bp downstream