rs230513825 SNP Detail

Summary

• ID
  rs230513825
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:189075894 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGATCGGAC GACGACGCCC
  CCGCGCGCGA TGGGTCACCC CGATTGCGTG GCCGCCTGGG GTCCCGCGCG GGCCCTGGGT
  GCGCTCGGCC CTTGGCTCCG TGCGCTCGGC CGGCGGCTGG GCTCTGCCCC GGGGCTCAGC
  GAGGGGGTGA TCACTGCAGC CCGTGCGGCC GAGCACCCGG GTGTCTTTGT GCCGCGGCCC
  Y
  GTGCAGCCCC TCTCCGCATG TCTTTGTGAG GCGCCCCGCC TGGCTCGAGC CCCGCCGGGC
  GCCCGCAAGG TGGGGGTGTG GCCCGGGGTG GCCCGCCTGG CCCGTAGCAC CACTCTCCCC
  TCGCCTCGCC GCTCTTCCCT CCTTTCCGAA CTCCCTCCTC CTGCTCCTGC GGTGTCCCCG
  CCCGGGCTCG CCTCCCCGCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss352785895	MGP_WTSI_1_191167576	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs230513825					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss352785895	MGP_WTSI_1_191167576	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:189075894 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
A430027H14Rik	RIKEN cDNA A430027H14 gene			within coordinates
Cpgi1195	CpG island 1195			within coordinates
Kcnk2	potassium channel, subfamily K, member 2			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Rr425779	regulatory region 425779			1856 bp distal
Rr425780	regulatory region 425780			553 bp distal
Rr425781	regulatory region 425781			397 bp distal
Rr425782	regulatory region 425782			256 bp distal
Rr425783	regulatory region 425783			1 bp distal
Rr425784	regulatory region 425784			within coordinates
Rr425785	regulatory region 425785			258 bp proximal
Rr425786	regulatory region 425786			298 bp proximal
Rr425787	regulatory region 425787			485 bp proximal
Tssr15712	transcription start site region 15712			339 bp upstream
Tssr15713	transcription start site region 15713			10 bp downstream