rs230514767 SNP Detail

Summary

• ID
  rs230514767
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:60937978 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCACCAGA CCGGAGTCCA
  CACCTGACAC GGGATGAGCC TTTCTGTATG TGTGTAGGGG AAGAGAGCTG CCTGCCATCC
  CAAAAGCTGC TCACAGAGAT GGAGTTCCTG GTCCATGTGT TACATGGTTG CCACAGCCAT
  CCAGATAGCC CTGGGCTCCT CTCCCGGTCC CTAAATGACC TCAGCCTTAC ACTCCCAACC
  M
  CCCCCCCCAA AAAAAAACCA AACAGGGTTA GAATTTGCTT GCCTTCTTGC CTTGTTCCCC
  CAACCCCCAA GCTGCCTATT TGCTTGCCTA TGGGGAACTA AAACCAGATG TGACGTCAGC
  AGTCTCCAGG CAGAAAGAGG TTTTGAAAGA GACTCTGGGA GATTGACCAC GAATGGCATT
  CTAGCAAGAA GGTAACCAGA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss400867837	MGP_WTSI_18_60964560	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs230514767					SNP	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss400867837	MGP_WTSI_18_60964560	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:60937978 () rs orientation: forward

Symbol	Name	Function Class
Cd74	CD74 antigen (invariant polypeptide of major histocompatibility complex, class II antigen-associated)	within coordinates
D18Mit77	DNA segment, Chr 18, Massachusetts Institute of Technology 77	665 bp distal
Rr405669	regulatory region 405669	1058 bp downstream
Rr405670	regulatory region 405670	within coordinates
Rr405671	regulatory region 405671	750 bp upstream
Rr405672	regulatory region 405672	1606 bp upstream
Tssr151326	transcription start site region 151326	1050 bp downstream
Tssr151327	transcription start site region 151327	1038 bp downstream
Tssr151328	transcription start site region 151328	100 bp upstream
Tssr151329	transcription start site region 151329	172 bp upstream
Tssr151330	transcription start site region 151330	1036 bp upstream
Tssr151331	transcription start site region 151331	1072 bp upstream
Tssr153492	transcription start site region 153492	892 bp upstream