rs230516025 SNP Detail

Summary

• ID
  rs230516025
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:34573819 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGGGCTCC ATGGATAAAG
  CCCTGCTGTG TTAAGCCCAG TGACCCATTC AGAGCCTTGG AACCCATGGA AATAAAATTA
  AAATGTAAAT ATGTTACAGA AGGTATGCTG GGGCCAGCCA GATGGCTCAG TGGAGAAAGG
  GGCTGATAAA GGAAGGTGCT TGCTGCCAAG TCTGCCCACC TGAGTTCAAT CCCTGGGTCT
  Y
  ACACGGTGGA AGGAGAGAAT CAATTTCCAT AAGTGTCCAT AAGTATCCAT AAGTATACTA
  CTGCATGTGT GTACTCTCAC GCATATAAAC ACATTCAATT ATCCATCAAT CAATCAATGT
  GAAGGGATTC CTTTTCTGTT GTGGAAATGA AACACCGTAA CCAGAGCAAT TTGTAGAAGG
  CAACAATTTA TTGTGGCTTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss374218775	MGP_WTSI_8_35169719	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs230516025					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss374218775	MGP_WTSI_8_35169719	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:34573819 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20241	CpG island 20241	1450 bp proximal
Dctn6	dynactin 6	within coordinates
Rr400814	regulatory region 400814	1681 bp upstream
Rr661952	regulatory region 661952	238 bp proximal
Rr661953	regulatory region 661953	670 bp proximal
Rr661954	regulatory region 661954	1177 bp proximal
Rr661955	regulatory region 661955	1186 bp proximal
Rr661956	regulatory region 661956	1861 bp proximal
Tssr80889	transcription start site region 80889	1097 bp downstream
Tssr80890	transcription start site region 80890	1151 bp downstream
Tssr80891	transcription start site region 80891	1778 bp downstream
Tssr80892	transcription start site region 80892	1846 bp downstream